Publications

2017

Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species

Bourneuf E, Otz P, Pausch H, Jagannathan V, Michot P, Grohs C, Piton G, Ammermüller S, Deloche MC, Fritz S, Leclerc H, Péchoux C, Boukadiri A, Hozé C, Saintilan R, Créchet F, Mosca M, Segelke D, Guillaume F, Bouet S, Baur A, Vasilescu A, Genestout L, Thomas A, Allais-Bonnet A, Rocha D, Colle MA, Klopp C, Esquerré D, Wurmser C, Flisikowski K, Schwarzenbacher H, Burgstaller J, Brügmann M, Dietschi E, Rudolph N, Freick M, Barbey S, Fayolle G, Danchin-Burge C, Schibler L, Bed'Hom B, Hayes BJ, Daetwyler HD, Fries R, Boichard D, Pin D, Drögemüller C, Capitan A

Sci Rep. 2017 Sep 13;7(1):11466

Bovine and murine models highlight novel roles for SLC25A46 in mitochondrial dynamics and metabolism, with implications for human and animal health

Duchesne A, Vaiman A, Castille J, Beauvallet C, Gaignard P, Floriot S, Rodriguez S, Vilotte M, Boulanger L, Passet B, Albaric O, Guillaume F, Boukadiri A, Richard L, Bertaud M, Timsit E, Guatteo R, Jaffrézic F, Calvel P, Helary L, Mahla R, Esquerré D, Péchoux C, Liuu S, Vallat JM, Boichard D, Slama A, Vilotte JL

PLoS Genet. 2017 Apr 4;13(4):e1006597

Genetic Determinism of Fearfulness, General Activity and Feeding Behavior in Chickens and Its Relationship with Digestive Efficiency

Mignon-Grasteau S, Chantry-Darmon C, Boscher MY, Sellier N, Le Bihan-Duval E, Bertin A.

Behav Genet. 2017 Jan;47(1):114-124

2016

Whole-genome scan to detect quantitative trait loci associated with milk protein composition in 3 French dairy cattle breeds

Sanchez MP, Govignon-Gion A, Ferrand M, Gelé M, Pourchet D, Amigues Y, Fritz S, Boussaha M, Capitan A, Rocha D, Miranda G, Martin P, Brochard M, Boichard D.

J Dairy Sci. 2016 Oct;99(10):8203-15

A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds

Michot P, Chahory S, Marete A, Grohs C, Dagios D, Donzel E, Aboukadiri A, Deloche MC, Allais-Bonnet A, Chambrial M, Barbey S, Genestout L, Boussaha M, Danchin-Burge C, Fritz S, Boichard D, Capitan A.

Genet Sel Evol. 2016 Aug 10;48(1):56

A molecular analysis of the patterns of genetic diversity in local chickens from western Algeria in comparison with commercial lines and wild jungle fowls

Mahammi FZ, Gaouar SB, Laloë D, Faugeras R, Tabet-Aoul N, Rognon X, Tixier-Boichard M, Saidi-Mehtar N

J Anim Breed Genet. 2016 Feb; 133(1):59-70

2015

Detection of QTL controlling feed efficiency and excretion in chickens fed a wheat-based diet

Mignon-Grasteau S, Rideau N, Gabriel I, Chantry-Darmon C, Boscher MY, Sellier N, Chabault M, Le Bihan-Duval E, Narcy A

Genet Sel Evol. 2015 Sep 25; 47:74

Impact of Selection for Digestive Efficiency on Microbiota Composition in the Chicken

Mignon-Grasteau S, Narcy A, Rideau N, Chantry-Darmon C, Boscher MY, Sellier N, Chabault M, Konsak-Ilievski B, Le Bihan-Duval E, Gabriel I

PLoS One. 2015 Aug 12; 10(8)

Whole-genome sequencing identifies a homozygous deletion encompassing exons 17 to 23 of the integrin beta 4 gene in a Charolais calf with junctional epidermolysis bullosa.

Michot P, Fantini O, Braque R, Allais-Bonnet A, Saintilan R, Grohs C, Barbieri J, Genestout L, Danchin-Burge C, Gourreau JM, Boichard D, Pin D, Capitan A

Genet Sel Evol. 2015 May 3; 47:37

C-Nap1 mutation affects centriole cohesion and is associated with a Seckel-like syndrome in cattle

Floriot S, Vesque C, Rodriguez S, Bourgain-Guglielmetti F, Karaiskou A, Gautier M, Duchesne A, Barbey S, Fritz S, Vasilescu A, Bertaud M, Moudjou M, Halliez S, Cormier-Daire V, Hokayem JE, Nigg EA, Manciaux L, Guatteo R, Cesbron N, Toutirais G, Eggen A, Schneider-Maunoury S, Boichard D, Sobczak-Thépot J, Schibler L

Nat Commun. 2015 Apr 23;6:6894

2014

Development of SNP-genotyping arrays in two shellfish species

Lapègue S, Harrang E, Heurtebise S, Flahauw E, Donnadieu C, Gayral P, Ballenghien M, Genestout L, Barbotte L, Mahla R, Haffray P, Klopp C

Mol Ecol Resour. 2014 Jul; 14(4):820-30

Detection of QTL controlling digestive efficiency and anatomy of the digestive tract in chicken fed a wheat-based diet

Tran TS, Narcy A, Carré B, Gabriel I, Rideau N, Gilbert H, Demeure O, Bed'Hom B, Chantry-Darmon C, Boscher MY, Bastianelli D, Sellier N, Chabault M, Calenge F, Le Bihan-Duval E, Beaumont C, Mignon-Grasteau S

Genet Sel Evol. 2014 Apr 3; 46:25

2013

Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds

McClure MC, Sonstegard TS, Wiggans GR, Van Eenennaam AL, Weber KL, Penedo CT, Berry DP, Flynn J, Garcia JF, Carmo AS, Regitano LC, Albuquerque M, Silva MV, Machado MA, Coffey M, Moore K, Boscher MY, Genestout L, Mazza R, Taylor JF, Schnabel RD, Simpson B, Marques E, McEwan JC, Cromie A, Coutinho LL, Kuehn LA, Keele JW, Piper EK, Cook J, Williams R; Bovine HapMap Consortium, Van Tassell CP

Front Genet. 2013 Sep 18; 4:176

2012

N. Detection of quantitative trait loci for resistance to gastrointestinal nematode infections in Creole goats

de la Chevrotière C, Bishop SC, Arquet R, Bambou JC, Schibler L, Amigues Y, Moreno C, Mandonnet N

Anim Genet. 2012 Dec; 43(6):768-75

A 3.7 Mb deletion encompassing ZEB2 causes a novel polled and multisystemic syndrome in the progeny of a somatic mosaic bull

Capitan A, Allais-Bonnet A, Pinton A, Marquant-Le Guienne B, Le Bourhis D, Grohs C, Bouet S, Clément L, Salas-Cortes L, Venot E, Chaffaux S, Weiss B, Delpeuch A, Noé G, Rossignol MN, Barbey S, Dozias D, Cobo E, Barasc H, Auguste A, Pannetier M, Deloche MC, Lhuilier E, Bouchez O, Esquerré D, Salin G, Klopp C, Donnadieu C, Chantry-Darmon C, Hayes H, Gallard Y, Ponsart C, Boichard D, Pailhoux E

PLoS One. 2012; 7(11):e49084

An ABC estimate of pedigree error rate: application in dog, sheep and cattle breeds

Leroy G, Danchin-Burge C, Palhiere I, Baumung R, Fritz S, Mériaux JC, Gautier M

Anim Genet. 2012 Jun; 43(3):309-14

Microsatellite mapping of quantitative trait loci affecting female reproductive tract characteristics in Meishan x Large White F(2) pigs

Rosendo A, Iannuccelli N, Gilbert H, Riquet J, Billon Y, Amigues Y, Milan D, Bidanel JP

J Anim Sci. 2012 Jan; 90(1):37-44

2011

A newly described bovine type 2 scurs syndrome segregates with a frame-shift mutation in TWIST1

Capitan A, Grohs C, Weiss B, Rossignol MN, Reversé P, Eggen A

PLoS One. 2011; 6(7):e22242

Genetic characterization of the Blonde d'Aquitaine cattle breed using microsatellite markers and relationship with three other French cattle populations

Amigues Y, Boitard S, Bertrand C, Sancristobal M, Rocha D

J Anim Breed Genet. 2011 Jun; 128(3):201-8

2010

Genetic variability, structure and assignment of Spanish and French pig populations based on a large sampling

Boitard S, Chevalet C, Mercat MJ, Meriaux JC, Sanchez A, Tibau J, Sancristobal M

Anim Genet. 2010 Dec; 41(6):608-18

Reproductive technologies and genomic selection in cattle

Humblot P, Le Bourhis D, Fritz S, Colleau JJ, Gonzalez C, Guyader Joly C, Malafosse A, Heyman Y, Amigues Y, Tissier M, Ponsart C

Vet Med Int. 2010 Oct 24; 2010:192787

Genetic variability and linkage disequilibrium patterns in the bovine DNAJA1 gene

Marty A, Amigues Y, Servin B, Renand G, Levéziel H, Rocha D

Mol Biotechnol. 2010 Mar; 44(3):190-7

2009

Genetic diversity of dog breeds: between-breed diversity, breed assignation and conservation approaches

Leroy G, Verrier E, Meriaux JC, Rognon X

Anim Genet. 2009 Jun; 40(3):333-43

Genetic diversity of dog breeds: within-breed diversity comparing genealogical and molecular data

Leroy G, Verrier E, Meriaux JC, Rognon X

Anim Genet. 2009 Jun; 40(3):323-32

Identification of seven haplotypes of the caprine PrP gene at codons 127, 142, 154, 211, 222 and 240 in French Alpine and Saanen breeds and their association with classical scrapie

Barillet F, Mariat D, Amigues Y, Faugeras R, Caillat H, Moazami-Goudarzi K, Rupp R, Babilliot JM, Lacroux C, Lugan S, Schelcher F, Chartier C, Corbière F, Andréoletti O, Perrin-Chauvineau C

J Gen Virol. 2009 Mar;90(Pt 3):769-76

Genetic diversity of a large set of horse breeds raised in France assessed by microsatellite polymorphism

Leroy G, Callède L, Verrier E, Mériaux JC, Ricard A, Danchin-Burge C, Rognon X

Genet Sel Evol. 2009 Jan 5; 41:5

2008

187 embryo genotyping from in vivo biopsied bovine embryos after whole genome amplification

Le Bourhis D, Amigues Y, Charreaux F, Lacaze S, Tissier M, Guyader-Joly C, Mervant G, Moulin B, Vignon X, Gonzalez C, Humblot P

Reproduction Fertility and Development. 2008; 21(1):192-192

Impact of strong selection for the PrP major gene on genetic variability of four French sheep breeds

Palhiere I, Brochard M, Moazami-Goudarzi K, Laloeë D, Amigues Y, Bed'hom B, Neuts E, Leymarie C, Pantano T, Cribiu EP, Bibé B, Verrier E

Genet Sel Evol. 2008 Nov-Dec; 40(6):663-80

Detection of quantitative trait loci for teat number and female reproductive traits in Meishan × Large White F2 pigs

Bidanel JP, Rosendo A, Iannuccelli N, Riquet J, Gilbert H, Caritez JC, Billon, Y, Amigues Y, Prunier A, Milan D

Animal. 2008 Jun; 2(6):813-20

2007

An international parentage and identification panel for the domestic cat (Felis catus)

Lipinski MJ, Amigues Y, Blasi M, Broad TE, Cherbonnel C, Cho GJ, Corley S, Daftari P, Delattre DR, Dileanis S, Flynn JM, Grattapaglia D, Guthrie A, Harper, C, Karttunen PL, Kimura H, Lewis GM, Longeri M, Meriaux JC, Morita M, Morrin-O'donnell RC, Niini T, Pedersen NC, Perrotta G, Polli M, Rittler S, Schubbert R, Strillacci MG, Van Haeringen H, Van Haeringen W, Lyons LA

Anim Genet. 2007 Aug; 38(4):371-7

2006

Genetic diversity in European pigs utilizing amplified fragment length polymorphism markers

SanCristobal M, Chevalet C, Peleman J, Heuven H, Brugmans B, van Schriek M, Joosten R, Rattink AP, Harlizius B, Groenen MA, Amigues Y, Boscher MY, Russell G, Law A, Davoli R, Russo V, Dèsautés C, Alderson L, Fimland E, Bagga M, Delgado JV, Vega-Pla JL, Martinez AM, Ramos M, Glodek P, Meyer JN, Gandini G, Matassino D, Siggens K, Laval G, Archibald A, Milan D, Hammond K, Cardellino R, Haley C, Plastow G

Anim Genet. 2006 Jun; 37(3):232-8

Genetic diversity within and between European pig breeds using microsatellite markers

SanCristobal M, Chevalet C, Haley CS, Joosten R, Rattink AP, Harlizius B, Groenen MA, Amigues Y, Boscher MY, Russell G, Law A, Davoli R, Russo V, Désautés C, Alderson L, Fimland E, Bagga M, Delgado JV, Vega-Pla JL, Martinez AM, Ramos M, Glodek P, Meyer JN, Gandini GC, Matassino D, Plastow GS, Siggens KW, Laval G, Archibald AL, Milan D, Hammond K, Cardellino R

Anim Genet. 2006 Jun; 37(3):189-98

Genetic diversity analysis using lowly polymorphic dominant markers: the example of AFLP in pigs

Foulley JL, van Schriek MG, Alderson L, Amigues Y, Bagga M, Boscher MY, Brugmans B, Cardellino R, Davoli R, Delgado JV, Fimland E, Gandini GC, Glodek P, Groenen MA, Hammond K, Harlizius B, Heuven H, Joosten R, Martinez AM, Matassino D, Meyer JN, Peleman J, Ramos AM, Rattink AP, Russo V, Siggens KW, Vega-Pla JL, Ollivier L

J Hered. 2006 May-Jun; 97(3):244-52

Mapping quantitative trait loci affecting fatness and breast muscle weight in meat-type chicken lines divergently selected on abdominal fatness

Lagarrigue S, Pitel F, Carré W, Abasht B, Le Roy P, Neau A, Amigues Y, Sourdioux M, Simon J, Cogburn L, Aggrey S, Leclercq B, Vignal A, Douaire M

Genet Sel Evol. 2006 Jan-Feb; 38(1):85-97

2005

Genetic diversity within and among four South European native horse breeds based on microsatellite DNA analysis: implications for conservation

Solis A, Jugo BM, Mériaux JC, Iriondo M, Mazón LI, Aguirre AI, Vicario A, Estomba A

J Hered. 2005 Nov-Dec; 96(6):670-8

An assessment of European pig diversity using molecular markers: Partitioning of diversity among breeds

Ollivier L, Alderson L, Gandini GC, Foulley JL, Haley CS, Joosten R, Rattink AP, Harlizius B, Groenen MAM, Amigues Y, Boscher MY, Russell G, Law A, Davoli R, Russo V, Matassino D, Désautés C, Fimland E, Bagga M, Delgado JC, Vega-Pla JL, Martinez AM, Ramos AM, Glodek P, Meyer JN, Plastow GS, Siggens KW, Archibald AL, Milan D, San Cristobal M, Laval G, Hammond K, Cardellino R, Chevalet C

Conservation Genetics. 2005; 6(5), 729-741

2003

In vitro and in vivo comparison of Ham's F-10, Emcare holding solution and ViGro holding plus for the cooled storage of equine embryos

Moussa M, Duchamp G, Mahla R, Bruyas JF, Daels PF

Theriogenology. 2003 Apr 1; 59(7):1615-25

Detection of quantitative trait loci for fat androstenone levels in pigs

Quintanilla R, Demeure O, Bidanel JP, Milan D, Iannuccelli N, Amigues Y, Gruand J, Renard C, Chevalet C, Bonneau M

J Anim Sci. 2003 Feb; 81(2):385-94

The use of microsatellite genotyping for population studies in the pig with individual and pooled DNA samples

Groenen MAM, Joosten R, Boscher MY, Amigues Y, Rattink A, Harlizius B, Van der Poel JJ, Crooijmans RPMA

Archivos de Zootecnia. 2003; 52 (198): 145-155

Detection of genes influencing economic traits in three French dairy cattle breeds

Boichard D, Grohs C, Bourgeois F, Cerqueira F, Faugeras R, Neau A, Rupp R, Amigues Y, Boscher MY, Levéziel H

Genet Sel Evol. 2003 Jan-Feb; 35(1):77-101

Dunner S, Miranda ME, Amigues Y, Cañón J, Georges M, Hanset R, Williams J, Ménissier F

Dunner S, Miranda ME, Amigues Y, Cañón J, Georges M, Hanset R, Williams J, Ménissier F

Genet Sel Evol. 2003 Jan-Feb; 35(1):103-18

2002

Detection of quantitative trait loci for carcass composition traits in pigs

Milan D, Bidanel JP, Iannuccelli N, Riquet J, Amigues Y, Gruand J, Le Roy P, Renard C, Chevalet C

Genet Sel Evol. 2002 Nov-Dec; 34(6):705-28

Genetic linkage mapping of quantitative trait loci for behavioral and neuroendocrine stress response traits in pigs

Désautés C, Bidanelt JP, Milant D, Iannuccelli N, Amigues Y, Bourgeois F, Caritez JC, Renard C, Chevalet C, Mormède P

J Anim Sci. 2002 Sep; 80(9):2276-85

Segregation of a major gene influencing ovulation in progeny of Lacaune meat sheep

Bodin L, SanCristobal M, Lecerf F, Mulsant P, Bibé B, Lajous D, Belloc JP, Eychenne F, Amigues Y, Elsen JM

Genet Sel Evol. 2002 Jul-Aug; 34(4):447-64

Simultaneous genotyping to detect myostatin gene polymorphism in beef cattle breeds

Miranda ME, Amigues Y, Boscher MY, Menissier F, Cortés O, Dunner S

Journal of Animal Breeding and Genetics. 2002; 119(6):361 - 366

2001

Detection of quantitative trait loci for growth and fatness in pigs

Bidanel JP, Milan D, Iannuccelli N, Amigues Y, Boscher MY, Bourgeois F, Caritez JC, Gruand J, Le Roy P, Lagant H, Quintanilla R, Renard C, Gellin J, Ollivier L, Chevalet C

Genet Sel Evol. 2001 May-Jun; 33(3):289-309

2000

Which insemination results in fertilization when several are performed before ovulation ?

Clément F, Vincent P, Mahla R, Meriaux JC, Palmer E

J Reprod Fertil Suppl. 2000; (56):579-85

A first genotyping assay of French cattle breeds based on a new allele of the extension gene encoding the melanocortin-1 receptor (Mc1r)

Rouzaud F, Martin J, Gallet PF, Delourme D, Goulemot-Leger V, Amigues Y, Ménissier F, Levéziel H, Julien R, Oulmouden A

Genet Sel Evol. 2000 Sep-Oct; 32(5):511-20

1999

Genetic susceptibility and transmission factors in scrapie: detailed analysis of an epidemic in a closed flock of Romanov

Elsen JM, Amigues Y, Schelcher F, Ducrocq V, Andreoletti O, Eychenne F, Khang JV, Poivey JP, Lantier F, Laplanche JL

Arch Virol. 1999; 144(3):431-45

Report of the International Equine Gene Mapping Workshop: male linkage map

Guérin G, Bailey E, Bernoco D, Anderson I, Antczak DF, Bell K, Binns MM, Bowling AT, Brandon R, Cholewinski G, Cothran EG, Ellegren H, Förster M, Godard S, Horin P, Ketchum M, Lindgren G, McPartlan H, Mériaux JC, Mickelson JR, Millon LV, Murray J, Neau A, Røed K, Ziegle J, et al

Anim Genet. 1999 Oct; 30(5):341-54

1998

Eight canine tetranucleotide repeats

Mariat D, Amigues Y, Boscher MY

Anim Genet. 1998 Apr; 29(2):156-7

1997

Follicular fluid is not a compulsory carrier of the oocyte at ovulation in the mare

Palmer E, Duchamp G, Cribiu EP, Mahla R, Boyazoglu S, Bézard J

Equine Vet J Suppl. 1997 Dec; (25):22-4

Parentage testing of Day 10 equine embryos by amplified PCR analysis of microsatellites

Guèrand M, Mahla R, Lagneaux D, Amigues Y, Palmer E, Bézard J

Equine Vet J Suppl. 1997 Dec; (25):69-71

Characterization, genetic and physical mapping analysis of 36 horse plasmid and cosmid-derived microsatellites

Godard S, Vaiman D, Oustry A, Nocart M, Bertaud M, Guzylack S, Mériaux JC, Cribiu EP, Guérin G

Mamm Genome. 1997 Oct; 8(10):745-50

1996

A genetic linkage map of the male goat genome

Vaiman D, Schibler L, Bourgeois F, Oustry A, Amigues Y, Cribiu EP

Genetics. 1996 Sep; 144(1):279-305

1995

Genotype at the αs1-casein locus and selection of bucks on progeny test in the Alpine and Saanen breeds

Manfredi E, Ricordeau G, Barbieri ME, Amigues Y, Bibé B

Genetics Selection Evolution. 1995; 27 (5): 451-458

Sequence conservation of microsatellites between Bos taurus (cattle), Capra hircus (goat) and related species. Examples of use in parentage testing and phylogeny analysis

Pépin L, Amigues Y, Lépingle A, Berthier JL, Bensaid A, Vaiman D

Heredity (Edinb). 1995 Jan; 74 (Pt 1):53-61

1994

Genetic blood markers in Arabian, Barb and Arab-Barb horses in Morocco

Ouragh L, Mériaux JC, Braun JP

Anim Genet. 1994 Feb; 25(1):45-7

Characterization of seven new horse microsatellites: HMS1, HMS2, HMS3, HMS5, HMS6, HMS7 and HMS8

Guérin G, Bertaud M, Amigues Y

Anim Genet. 1994 Feb; 25(1):62

1988

The effect of phosphate on the unfolding-refolding of phosphoglycerate kinase induced by guanidine hydrochloride

Chardot T, Mitraki A, Amigues Y, Desmadril M, Betton JM, Yon JM

FEBS Lett. 1988 Feb 8; 228(1):65-8

1984

Monoclonal antibodies directed against equine blood group antigens

Metenier L, Grosclaude J, Meriaux JC

Dev Biol Stand. 1984; 57:77-83

1981

A contribution to the D system in horses

Bouquet Y, Van Zeveren A, Van de Weghe A, Mériaux JC

Anim Blood Groups Biochem Genet. 1981; 12(3):187-92