Publications

An initiator codon mutation in SDE2 causes recessive embryonic lethality in Holstein cattle

Fritz S, Hoze C, Rebours E, Barbat A, Bizard M, Chamberlain A, Escouflaire C, Vander Jagt C, Boussaha M, Grohs C, Allais-Bonnet A, Philippe M, Vallée A, Amigues Y, Hayes BJ, Boichard D, Capitan A.

J Dairy Sci. 2018 Apr 18. pii: S0022-0302(18)30360-6

The genetics of overwintering performance in two-year old common carp and its relation to performance until market size

Martin Prchal, Antti Kause, Marc Vandeputte, David Gela, Jean-Michel Allamellou, Girish Kumar, Anastasia Bestin, Jérôme Bugeon, Jinfeng Zhao, Martin Kocour

PLoS One. 2018; 13(1): e0191624.

Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species

Bourneuf E, Otz P, Pausch H, Jagannathan V, Michot P, Grohs C, Piton G, Ammermüller S, Deloche MC, Fritz S, Leclerc H, Péchoux C, Boukadiri A, Hozé C, Saintilan R, Créchet F, Mosca M, Segelke D, Guillaume F, Bouet S, Baur A, Vasilescu A, Genestout L, Thomas A, Allais-Bonnet A, Rocha D, Colle MA, Klopp C, Esquerré D, Wurmser C, Flisikowski K, Schwarzenbacher H, Burgstaller J, Brügmann M, Dietschi E, Rudolph N, Freick M, Barbey S, Fayolle G, Danchin-Burge C, Schibler L, Bed'Hom B, Hayes BJ, Daetwyler HD, Fries R, Boichard D, Pin D, Drögemüller C, Capitan A

Sci Rep. 2017 Sep 13;7(1):11466

Bovine and murine models highlight novel roles for SLC25A46 in mitochondrial dynamics and metabolism, with implications for human and animal health

Duchesne A, Vaiman A, Castille J, Beauvallet C, Gaignard P, Floriot S, Rodriguez S, Vilotte M, Boulanger L, Passet B, Albaric O, Guillaume F, Boukadiri A, Richard L, Bertaud M, Timsit E, Guatteo R, Jaffrézic F, Calvel P, Helary L, Mahla R, Esquerré D, Péchoux C, Liuu S, Vallat JM, Boichard D, Slama A, Vilotte JL

PLoS Genet. 2017 Apr 4;13(4):e1006597

Genetic Determinism of Fearfulness, General Activity and Feeding Behavior in Chickens and Its Relationship with Digestive Efficiency

Mignon-Grasteau S, Chantry-Darmon C, Boscher MY, Sellier N, Le Bihan-Duval E, Bertin A.

Behav Genet. 2017 Jan;47(1):114-124

Whole-genome scan to detect quantitative trait loci associated with milk protein composition in 3 French dairy cattle breeds

Sanchez MP, Govignon-Gion A, Ferrand M, Gelé M, Pourchet D, Amigues Y, Fritz S, Boussaha M, Capitan A, Rocha D, Miranda G, Martin P, Brochard M, Boichard D.

J Dairy Sci. 2016 Oct;99(10):8203-15

A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds

Michot P, Chahory S, Marete A, Grohs C, Dagios D, Donzel E, Aboukadiri A, Deloche MC, Allais-Bonnet A, Chambrial M, Barbey S, Genestout L, Boussaha M, Danchin-Burge C, Fritz S, Boichard D, Capitan A.

Genet Sel Evol. 2016 Aug 10;48(1):56

A molecular analysis of the patterns of genetic diversity in local chickens from western Algeria in comparison with commercial lines and wild jungle fowls

Mahammi FZ, Gaouar SB, Laloë D, Faugeras R, Tabet-Aoul N, Rognon X, Tixier-Boichard M, Saidi-Mehtar N

Detection of QTL controlling feed efficiency and excretion in chickens fed a wheat-based diet

Mignon-Grasteau S, Rideau N, Gabriel I, Chantry-Darmon C, Boscher MY, Sellier N, Chabault M, Le Bihan-Duval E, Narcy A

Impact of Selection for Digestive Efficiency on Microbiota Composition in the Chicken

Mignon-Grasteau S, Narcy A, Rideau N, Chantry-Darmon C, Boscher MY, Sellier N, Chabault M, Konsak-Ilievski B, Le Bihan-Duval E, Gabriel I

Whole-genome sequencing identifies a homozygous deletion encompassing exons 17 to 23 of the integrin beta 4 gene in a Charolais calf with junctional epidermolysis bullosa.

Michot P, Fantini O, Braque R, Allais-Bonnet A, Saintilan R, Grohs C, Barbieri J, Genestout L, Danchin-Burge C, Gourreau JM, Boichard D, Pin D, Capitan A

C-Nap1 mutation affects centriole cohesion and is associated with a Seckel-like syndrome in cattle

Floriot S, Vesque C, Rodriguez S, Bourgain-Guglielmetti F, Karaiskou A, Gautier M, Duchesne A, Barbey S, Fritz S, Vasilescu A, Bertaud M, Moudjou M, Halliez S, Cormier-Daire V, Hokayem JE, Nigg EA, Manciaux L, Guatteo R, Cesbron N, Toutirais G, Eggen A, Schneider-Maunoury S, Boichard D, Sobczak-Thépot J, Schibler L

Development of SNP-genotyping arrays in two shellfish species

Lapègue S, Harrang E, Heurtebise S, Flahauw E, Donnadieu C, Gayral P, Ballenghien M, Genestout L, Barbotte L, Mahla R, Haffray P, Klopp C

Detection of QTL controlling digestive efficiency and anatomy of the digestive tract in chicken fed a wheat-based diet

Tran TS, Narcy A, Carré B, Gabriel I, Rideau N, Gilbert H, Demeure O, Bed'Hom B, Chantry-Darmon C, Boscher MY, Bastianelli D, Sellier N, Chabault M, Calenge F, Le Bihan-Duval E, Beaumont C, Mignon-Grasteau S

Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds

McClure MC, Sonstegard TS, Wiggans GR, Van Eenennaam AL, Weber KL, Penedo CT, Berry DP, Flynn J, Garcia JF, Carmo AS, Regitano LC, Albuquerque M, Silva MV, Machado MA, Coffey M, Moore K, Boscher MY, Genestout L, Mazza R, Taylor JF, Schnabel RD, Simpson B, Marques E, McEwan JC, Cromie A, Coutinho LL, Kuehn LA, Keele JW, Piper EK, Cook J, Williams R; Bovine HapMap Consortium, Van Tassell CP

N. Detection of quantitative trait loci for resistance to gastrointestinal nematode infections in Creole goats

de la Chevrotière C, Bishop SC, Arquet R, Bambou JC, Schibler L, Amigues Y, Moreno C, Mandonnet N

A 3.7 Mb deletion encompassing ZEB2 causes a novel polled and multisystemic syndrome in the progeny of a somatic mosaic bull

Capitan A, Allais-Bonnet A, Pinton A, Marquant-Le Guienne B, Le Bourhis D, Grohs C, Bouet S, Clément L, Salas-Cortes L, Venot E, Chaffaux S, Weiss B, Delpeuch A, Noé G, Rossignol MN, Barbey S, Dozias D, Cobo E, Barasc H, Auguste A, Pannetier M, Deloche MC, Lhuilier E, Bouchez O, Esquerré D, Salin G, Klopp C, Donnadieu C, Chantry-Darmon C, Hayes H, Gallard Y, Ponsart C, Boichard D, Pailhoux E

An ABC estimate of pedigree error rate: application in dog, sheep and cattle breeds

Leroy G, Danchin-Burge C, Palhiere I, Baumung R, Fritz S, Mériaux JC, Gautier M

Microsatellite mapping of quantitative trait loci affecting female reproductive tract characteristics in Meishan x Large White F(2) pigs

Rosendo A, Iannuccelli N, Gilbert H, Riquet J, Billon Y, Amigues Y, Milan D, Bidanel JP

A newly described bovine type 2 scurs syndrome segregates with a frame-shift mutation in TWIST1

Capitan A, Grohs C, Weiss B, Rossignol MN, Reversé P, Eggen A

Genetic characterization of the Blonde d'Aquitaine cattle breed using microsatellite markers and relationship with three other French cattle populations

Amigues Y, Boitard S, Bertrand C, Sancristobal M, Rocha D

Genetic variability, structure and assignment of Spanish and French pig populations based on a large sampling

Boitard S, Chevalet C, Mercat MJ, Meriaux JC, Sanchez A, Tibau J, Sancristobal M

Reproductive technologies and genomic selection in cattle

Humblot P, Le Bourhis D, Fritz S, Colleau JJ, Gonzalez C, Guyader Joly C, Malafosse A, Heyman Y, Amigues Y, Tissier M, Ponsart C

Genetic variability and linkage disequilibrium patterns in the bovine DNAJA1 gene

Marty A, Amigues Y, Servin B, Renand G, Levéziel H, Rocha D

Genetic diversity of dog breeds: between-breed diversity, breed assignation and conservation approaches

Leroy G, Verrier E, Meriaux JC, Rognon X

Genetic diversity of dog breeds: within-breed diversity comparing genealogical and molecular data

Leroy G, Verrier E, Meriaux JC, Rognon X

Identification of seven haplotypes of the caprine PrP gene at codons 127, 142, 154, 211, 222 and 240 in French Alpine and Saanen breeds and their association with classical scrapie

Barillet F, Mariat D, Amigues Y, Faugeras R, Caillat H, Moazami-Goudarzi K, Rupp R, Babilliot JM, Lacroux C, Lugan S, Schelcher F, Chartier C, Corbière F, Andréoletti O, Perrin-Chauvineau C

Genetic diversity of a large set of horse breeds raised in France assessed by microsatellite polymorphism

Leroy G, Callède L, Verrier E, Mériaux JC, Ricard A, Danchin-Burge C, Rognon X

187 embryo genotyping from in vivo biopsied bovine embryos after whole genome amplification

Le Bourhis D, Amigues Y, Charreaux F, Lacaze S, Tissier M, Guyader-Joly C, Mervant G, Moulin B, Vignon X, Gonzalez C, Humblot P

Impact of strong selection for the PrP major gene on genetic variability of four French sheep breeds

Palhiere I, Brochard M, Moazami-Goudarzi K, Laloeë D, Amigues Y, Bed'hom B, Neuts E, Leymarie C, Pantano T, Cribiu EP, Bibé B, Verrier E

Detection of quantitative trait loci for teat number and female reproductive traits in Meishan × Large White F2 pigs

Bidanel JP, Rosendo A, Iannuccelli N, Riquet J, Gilbert H, Caritez JC, Billon, Y, Amigues Y, Prunier A, Milan D

An international parentage and identification panel for the domestic cat (Felis catus)

Lipinski MJ, Amigues Y, Blasi M, Broad TE, Cherbonnel C, Cho GJ, Corley S, Daftari P, Delattre DR, Dileanis S, Flynn JM, Grattapaglia D, Guthrie A, Harper, C, Karttunen PL, Kimura H, Lewis GM, Longeri M, Meriaux JC, Morita M, Morrin-O'donnell RC, Niini T, Pedersen NC, Perrotta G, Polli M, Rittler S, Schubbert R, Strillacci MG, Van Haeringen H, Van Haeringen W, Lyons LA

Genetic diversity in European pigs utilizing amplified fragment length polymorphism markers

SanCristobal M, Chevalet C, Peleman J, Heuven H, Brugmans B, van Schriek M, Joosten R, Rattink AP, Harlizius B, Groenen MA, Amigues Y, Boscher MY, Russell G, Law A, Davoli R, Russo V, Dèsautés C, Alderson L, Fimland E, Bagga M, Delgado JV, Vega-Pla JL, Martinez AM, Ramos M, Glodek P, Meyer JN, Gandini G, Matassino D, Siggens K, Laval G, Archibald A, Milan D, Hammond K, Cardellino R, Haley C, Plastow G

Genetic diversity within and between European pig breeds using microsatellite markers

SanCristobal M, Chevalet C, Haley CS, Joosten R, Rattink AP, Harlizius B, Groenen MA, Amigues Y, Boscher MY, Russell G, Law A, Davoli R, Russo V, Désautés C, Alderson L, Fimland E, Bagga M, Delgado JV, Vega-Pla JL, Martinez AM, Ramos M, Glodek P, Meyer JN, Gandini GC, Matassino D, Plastow GS, Siggens KW, Laval G, Archibald AL, Milan D, Hammond K, Cardellino R

Genetic diversity analysis using lowly polymorphic dominant markers: the example of AFLP in pigs

Foulley JL, van Schriek MG, Alderson L, Amigues Y, Bagga M, Boscher MY, Brugmans B, Cardellino R, Davoli R, Delgado JV, Fimland E, Gandini GC, Glodek P, Groenen MA, Hammond K, Harlizius B, Heuven H, Joosten R, Martinez AM, Matassino D, Meyer JN, Peleman J, Ramos AM, Rattink AP, Russo V, Siggens KW, Vega-Pla JL, Ollivier L

Mapping quantitative trait loci affecting fatness and breast muscle weight in meat-type chicken lines divergently selected on abdominal fatness

Lagarrigue S, Pitel F, Carré W, Abasht B, Le Roy P, Neau A, Amigues Y, Sourdioux M, Simon J, Cogburn L, Aggrey S, Leclercq B, Vignal A, Douaire M

Genetic diversity within and among four South European native horse breeds based on microsatellite DNA analysis: implications for conservation

Solis A, Jugo BM, Mériaux JC, Iriondo M, Mazón LI, Aguirre AI, Vicario A, Estomba A

An assessment of European pig diversity using molecular markers: Partitioning of diversity among breeds

Ollivier L, Alderson L, Gandini GC, Foulley JL, Haley CS, Joosten R, Rattink AP, Harlizius B, Groenen MAM, Amigues Y, Boscher MY, Russell G, Law A, Davoli R, Russo V, Matassino D, Désautés C, Fimland E, Bagga M, Delgado JC, Vega-Pla JL, Martinez AM, Ramos AM, Glodek P, Meyer JN, Plastow GS, Siggens KW, Archibald AL, Milan D, San Cristobal M, Laval G, Hammond K, Cardellino R, Chevalet C

In vitro and in vivo comparison of Ham's F-10, Emcare holding solution and ViGro holding plus for the cooled storage of equine embryos

Moussa M, Duchamp G, Mahla R, Bruyas JF, Daels PF

Detection of quantitative trait loci for fat androstenone levels in pigs

Quintanilla R, Demeure O, Bidanel JP, Milan D, Iannuccelli N, Amigues Y, Gruand J, Renard C, Chevalet C, Bonneau M

The use of microsatellite genotyping for population studies in the pig with individual and pooled DNA samples

Groenen MAM, Joosten R, Boscher MY, Amigues Y, Rattink A, Harlizius B, Van der Poel JJ, Crooijmans RPMA

Detection of genes influencing economic traits in three French dairy cattle breeds

Boichard D, Grohs C, Bourgeois F, Cerqueira F, Faugeras R, Neau A, Rupp R, Amigues Y, Boscher MY, Levéziel H

Dunner S, Miranda ME, Amigues Y, Cañón J, Georges M, Hanset R, Williams J, Ménissier F

Dunner S, Miranda ME, Amigues Y, Cañón J, Georges M, Hanset R, Williams J, Ménissier F

Detection of quantitative trait loci for carcass composition traits in pigs

Milan D, Bidanel JP, Iannuccelli N, Riquet J, Amigues Y, Gruand J, Le Roy P, Renard C, Chevalet C

Genetic linkage mapping of quantitative trait loci for behavioral and neuroendocrine stress response traits in pigs

Désautés C, Bidanelt JP, Milant D, Iannuccelli N, Amigues Y, Bourgeois F, Caritez JC, Renard C, Chevalet C, Mormède P

Segregation of a major gene influencing ovulation in progeny of Lacaune meat sheep

Bodin L, SanCristobal M, Lecerf F, Mulsant P, Bibé B, Lajous D, Belloc JP, Eychenne F, Amigues Y, Elsen JM

Simultaneous genotyping to detect myostatin gene polymorphism in beef cattle breeds

Miranda ME, Amigues Y, Boscher MY, Menissier F, Cortés O, Dunner S

Detection of quantitative trait loci for growth and fatness in pigs

Bidanel JP, Milan D, Iannuccelli N, Amigues Y, Boscher MY, Bourgeois F, Caritez JC, Gruand J, Le Roy P, Lagant H, Quintanilla R, Renard C, Gellin J, Ollivier L, Chevalet C

Which insemination results in fertilization when several are performed before ovulation ?

Clément F, Vincent P, Mahla R, Meriaux JC, Palmer E

A first genotyping assay of French cattle breeds based on a new allele of the extension gene encoding the melanocortin-1 receptor (Mc1r)

Rouzaud F, Martin J, Gallet PF, Delourme D, Goulemot-Leger V, Amigues Y, Ménissier F, Levéziel H, Julien R, Oulmouden A

Genetic susceptibility and transmission factors in scrapie: detailed analysis of an epidemic in a closed flock of Romanov

Elsen JM, Amigues Y, Schelcher F, Ducrocq V, Andreoletti O, Eychenne F, Khang JV, Poivey JP, Lantier F, Laplanche JL

Report of the International Equine Gene Mapping Workshop: male linkage map

Guérin G, Bailey E, Bernoco D, Anderson I, Antczak DF, Bell K, Binns MM, Bowling AT, Brandon R, Cholewinski G, Cothran EG, Ellegren H, Förster M, Godard S, Horin P, Ketchum M, Lindgren G, McPartlan H, Mériaux JC, Mickelson JR, Millon LV, Murray J, Neau A, Røed K, Ziegle J, et al

Eight canine tetranucleotide repeats

Mariat D, Amigues Y, Boscher MY

Follicular fluid is not a compulsory carrier of the oocyte at ovulation in the mare

Palmer E, Duchamp G, Cribiu EP, Mahla R, Boyazoglu S, Bézard J

Parentage testing of Day 10 equine embryos by amplified PCR analysis of microsatellites

Guèrand M, Mahla R, Lagneaux D, Amigues Y, Palmer E, Bézard J

Characterization, genetic and physical mapping analysis of 36 horse plasmid and cosmid-derived microsatellites

Godard S, Vaiman D, Oustry A, Nocart M, Bertaud M, Guzylack S, Mériaux JC, Cribiu EP, Guérin G

A genetic linkage map of the male goat genome

Vaiman D, Schibler L, Bourgeois F, Oustry A, Amigues Y, Cribiu EP

Genotype at the αs1-casein locus and selection of bucks on progeny test in the Alpine and Saanen breeds

Manfredi E, Ricordeau G, Barbieri ME, Amigues Y, Bibé B

Sequence conservation of microsatellites between Bos taurus (cattle), Capra hircus (goat) and related species. Examples of use in parentage testing and phylogeny analysis

Pépin L, Amigues Y, Lépingle A, Berthier JL, Bensaid A, Vaiman D

Genetic blood markers in Arabian, Barb and Arab-Barb horses in Morocco

Ouragh L, Mériaux JC, Braun JP

Characterization of seven new horse microsatellites: HMS1, HMS2, HMS3, HMS5, HMS6, HMS7 and HMS8

Guérin G, Bertaud M, Amigues Y

The effect of phosphate on the unfolding-refolding of phosphoglycerate kinase induced by guanidine hydrochloride

Chardot T, Mitraki A, Amigues Y, Desmadril M, Betton JM, Yon JM

Monoclonal antibodies directed against equine blood group antigens

Metenier L, Grosclaude J, Meriaux JC

A contribution to the D system in horses

Bouquet Y, Van Zeveren A, Van de Weghe A, Mériaux JC